Waksman Institute of Microbiology

Research output

Research output per year 1977 1998 1999 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2025

• 98417 Citations
• 139 h-index
• 1090 Article
• 129 Review article
• 36 Chapter
• 29 Comment/debate
• 66 More
  • 25 Short survey
  • 16 Letter
  • 13 Editorial
  • 5 Conference contribution
  • 4 Innovation
  • 2 Conference article
  • 1 Paper

Research output per year

Research output per year

Search results

• 2025

  Chromatin dynamics and epigenetic regulation in plant development and environmental responses

  Zander, M. & Gallego-Bartolomé, J., Feb 1 2025, In: Current Opinion in Plant Biology. 83, p. 102674 1 p.

  Rutgers, The State University

  Research output: Contribution to journal › Editorial › peer-review

• Distinct checkpoint and homolog biorientation pathways regulate meiosis I in Drosophila oocytes

  Shapiro, J. G., Changela, N., Jang, J. K., Joshi, J. N. & McKim, K. S., Jan 29 2025, In: PLoS genetics. 21, 1, e1011400.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Molecular basis of foreign DNA recognition by BREX anti-phage immunity system

  Drobiazko, A., Adams, M. C., Skutel, M., Potekhina, K., Kotovskaya, O., Trofimova, A., Matlashov, M., Yatselenko, D., Maxwell, K. L., Blower, T. R., Severinov, K., Ghilarov, D. & Isaev, A., Dec 2025, In: Nature communications. 16, 1, 1825.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Single-molecule studies reveal the off-pathway early paused state intermediates as a target of streptolydigin inhibition of RNA polymerase and its dramatic enhancement by Gre factors

  Arseniev, A., Panfilov, M., Pobegalov, G., Potyseva, A., Pavlinova, P., Yakunina, M., Lee, J., Borukhov, S., Severinov, K. & Khodorkovskii, M., Jan 13 2025, In: Nucleic acids research. 53, 1, gkae1135.

  Rowan University, Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • RNA-dependent RNA Polymerase (RdRP) 100%
  • Single-molecule Studies 100%
  • Streptolydigin 100%
  • Gre Factors 100%
  • RNA Polymerase 100%

• The Cul3 ubiquitin ligase engages Insomniac as an adaptor to impact sleep and synaptic homeostasis

  Li, Q., Lim, K. Y., Altawell, R., Verderose, F., Li, X., Dong, W., Martinez, J., Dickman, D. & Stavropoulos, N., Jan 22 2025, In: PLoS genetics. 21, 1, e1011574.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional corepressors in maize maintain meristem development

  Gregory, J., Liu, X., Chen, Z., Gallardo, C., Punskovsky, J., Koslow, G., Galli, M. & Gallavotti, A., Jan 2025, In: Plant physiology. 197, 1, kiae476.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Maize 100%
  • Transcriptional Repressor 100%
  • Meristem 100%
  • Inflorescence Meristem 100%
  • Meristem Development 100%

• Trojan horse peptide conjugates remodel the activity spectrum of clinical antibiotics

  Luo, S., Li, X. R., Gong, X. T., Kulikovsky, A., Qu, F., Beis, K., Severinov, K., Dubiley, S., Feng, X., Dong, S. H. & Nair, S. K., Jan 7 2025, In: Proceedings of the National Academy of Sciences of the United States of America. 122, 1, e2319483121.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Escherichia coli 100%
  • Microcin 100%
  • Oligopeptide 100%
  • Antibiotics 100%
  • Solution and Solubility 50%
• 2024

  AI is a viable alternative to high throughput screening: a 318-target study

  Wallach, I., Bernard, D., Nguyen, K., Ho, G., Morrison, A., Stecula, A., Rosnik, A., O’Sullivan, A. M., Davtyan, A., Samudio, B., Thomas, B., Worley, B., Butler, B., Laggner, C., Thayer, D., Moharreri, E., Friedland, G., Truong, H., van den Bedem, H. & Ng, H. L. & 667 others, Stafford, K., Sarangapani, K., Giesler, K., Ngo, L., Mysinger, M., Ahmed, M., Anthis, N. J., Henriksen, N., Gniewek, P., Eckert, S., de Oliveira, S., Suterwala, S., PrasadPrasad, S. V. K., Shek, S., Contreras, S., Hare, S., Palazzo, T., O’Brien, T. E., Van Grack, T., Williams, T., Chern, T. R., Kenyon, V., Lee, A. H., Cann, A. B., Bergman, B., Anderson, B. M., Cox, B. D., Warrington, J. M., Sorenson, J. M., Goldenberg, J. M., Young, M. A., DeHaan, N., Pemberton, R. P., Schroedl, S., Abramyan, T. M., Gupta, T., Mysore, V., Presser, A. G., Ferrando, A. A., Andricopulo, A. D., Ghosh, A., Ayachi, A. G., Mushtaq, A., Shaqra, A. M., Toh, A. K. L., Smrcka, A. V., Ciccia, A., de Oliveira, A. S., Sverzhinsky, A., de Sousa, A. M., Agoulnik, A. I., Kushnir, A., Freiberg, A. N., Statsyuk, A. V., Gingras, A. R., Degterev, A., Tomilov, A., Vrielink, A., Garaeva, A. A., Bryant-Friedrich, A., Caflisch, A., Patel, A. K., Rangarajan, A. V., Matheeussen, A., Battistoni, A., Caporali, A., Chini, A., Ilari, A., Mattevi, A., Foote, A. T., Trabocchi, A., Stahl, A., Herr, A. B., Berti, A., Freywald, A., Reidenbach, A. G., Lam, A., Cuddihy, A. R., White, A., Taglialatela, A., Ojha, A. K., Cathcart, A. M., Motyl, A. A. L., Borowska, A., D’Antuono, A., Hirsch, A. K. H., Porcelli, A. M., Minakova, A., Montanaro, A., Müller, A., Fiorillo, A., Virtanen, A., O’Donoghue, A. J., Del Rio Flores, A., Garmendia, A. E., Pineda-Lucena, A., Panganiban, A. T., Samantha, A., Chatterjee, A. K., Haas, A. L., Paparella, A. S., John, A. L. S., Prince, A., ElSheikh, A., Apfel, A. M., Colomba, A., O’Dea, A., Diallo, B. N., Ribeiro, B. M. R. M., Bailey-Elkin, B. A., Edelman, B. L., Liou, B., Perry, B., Chua, B. S. K., Kováts, B., Englinger, B., Balakrishnan, B., Gong, B., Agianian, B., Pressly, B., Salas, B. P. M., Duggan, B. M., Geisbrecht, B. V., Dymock, B. W., Morten, B. C., Hammock, B. D., Mota, B. E. F., Dickinson, B. C., Fraser, C., Lempicki, C., Novina, C. D., Torner, C., Ballatore, C., Bon, C., Chapman, C. J., Partch, C. L., Chaton, C. T., Huang, C., Yang, C. Y., Kahler, C. M., Karan, C., Keller, C., Dieck, C. L., Huimei, C., Liu, C., Peltier, C., Mantri, C. K., Kemet, C. M., Müller, C. E., Weber, C., Zeina, C. M., Muli, C. S., Morisseau, C., Alkan, C., Reglero, C., Loy, C. A., Wilson, C. M., Myhr, C., Arrigoni, C., Paulino, C., Santiago, C., Luo, D., Tumes, D. J., Keedy, D. A., Lawrence, D. A., Chen, D., Manor, D., Trader, D. J., Hildeman, D. A., Drewry, D. H., Dowling, D. J., Hosfield, D. J., Smith, D. M., Moreira, D., Siderovski, D. P., Shum, D., Krist, D. T., Riches, D. W. H., Ferraris, D. M., Anderson, D. H., Coombe, D. R., Welsbie, D. S., Hu, D., Ortiz, D., Alramadhani, D., Zhang, D., Chaudhuri, D., Slotboom, D. J., Ronning, D. R., Lee, D., Dirksen, D., Shoue, D. A., Zochodne, D. W., Krishnamurthy, D., Duncan, D., Glubb, D. M., Gelardi, E. L. M., Hsiao, E. C., Lynn, E. G., Silva, E. B., Aguilera, E., Lenci, E., Abraham, E. T., Lama, E., Mameli, E., Leung, E., Christensen, E. M., Mason, E. R., Petretto, E., Trakhtenberg, E. F., Rubin, E. J., Strauss, E., Thompson, E. W., Cione, E., Lisabeth, E. M., Fan, E., Kroon, E. G., Jo, E., García-Cuesta, E. M., Glukhov, E., Gavathiotis, E., Yu, F., Xiang, F., Leng, F., Wang, F., Ingoglia, F., van den Akker, F., Borriello, F., Vizeacoumar, F. J., Luh, F., Buckner, F. S., Vizeacoumar, F. S., Bdira, F. B., Svensson, F., Rodriguez, G. M., Bognár, G., Lembo, G., Zhang, G., Dempsey, G., Eitzen, G., Mayer, G., Greene, G. L., Garcia, G. A., Lukacs, G. L., Prikler, G., Parico, G. C. G., Colotti, G., De Keulenaer, G., Cortopassi, G., Roti, G., Girolimetti, G., Fiermonte, G., Gasparre, G., Leuzzi, G., Dahal, G., Michlewski, G., Conn, G. L., Stuchbury, G. D., Bowman, G. R., Popowicz, G. M., Veit, G., de Souza, G. E., Akk, G., Caljon, G., Alvarez, G., Rucinski, G., Lee, G., Cildir, G., Li, H., Breton, H. E., Jafar-Nejad, H., Zhou, H., Moore, H. P., Tilford, H., Yuan, H., Shim, H., Wulff, H., Hoppe, H., Chaytow, H., Tam, H. K., Van Remmen, H., Xu, H., Debonsi, H. M., Lieberman, H. B., Jung, H., Fan, H. Y., Feng, H., Zhou, H., Kim, H. J., Greig, I. R., Caliandro, I., Corvo, I., Arozarena, I., Mungrue, I. N., Verhamme, I. M., Qureshi, I. A., Lotsaris, I., Cakir, I., Perry, J. J. P., Kwiatkowski, J., Boorman, J., Ferreira, J., Fries, J., Kratz, J. M., Miner, J., Siqueira-Neto, J. L., Granneman, J. G., Ng, J., Shorter, J., Voss, J. H., Gebauer, J. M., Chuah, J., Mousa, J. J., Maynes, J. T., Evans, J. D., Dickhout, J., MacKeigan, J. P., Jossart, J. N., Zhou, J., Lin, J., Xu, J., Wang, J., Zhu, J., Liao, J., Xu, J., Zhao, J., Lin, J., Lee, J., Reis, J., Stetefeld, J., Bruning, J. B., Bruning, J. B., Coles, J. G., Tanner, J. J., Pascal, J. M., So, J., Pederick, J. L., Costoya, J. A., Rayman, J. B., Maciag, J. J., Nasburg, J. A., Gruber, J. J., Finkelstein, J. M., Watkins, J., Rodríguez-Frade, J. M., Arias, J. A. S., Lasarte, J. J., Oyarzabal, J., Milosavljevic, J., Cools, J., Lescar, J., Bogomolovas, J., Wang, J., Kee, J. M., Liao, J., Sistla, J. C., Abrahão, J. S., Sishtla, K., Francisco, K. R., Hansen, K. B., Molyneaux, K. A., Cunningham, K. A., Martin, K. R., Gadar, K., Ojo, K. K., Wong, K. S., Wentworth, K. L., Lai, K., Lobb, K. A., Hopkins, K. M., Parang, K., Machaca, K., Pham, K., Ghilarducci, K., Sugamori, K. S., McManus, K. J., Musta, K., Faller, K. M. E., Nagamori, K., Mostert, K. J., Korotkov, K. V., Liu, K., Smith, K. S., Sarosiek, K., Rohde, K. H., Kim, K. K., Lee, K. H., Pusztai, L., Lehtiö, L., Haupt, L. M., Cowen, L. E., Byrne, L. J., Su, L., Wert-Lamas, L., Puchades-Carrasco, L., Chen, L., Malkas, L. H., Zhuo, L., Hedstrom, L., Hedstrom, L., Walensky, L. D., Antonelli, L., Iommarini, L., Whitesell, L., Randall, L. M., Fathallah, M. D., Nagai, M. H., Kilkenny, M. L., Ben-Johny, M., Lussier, M. P., Windisch, M. P., Lolicato, M., Lolli, M. L., Vleminckx, M., Caroleo, M. C., Macias, M. J., Valli, M., Barghash, M. M., Mellado, M., Tye, M. A., Wilson, M. A., Hannink, M., Ashton, M. R., Cerna, M. V. C. D., Giorgis, M., Safo, M. K., Maurice, M. S., McDowell, M. A., Pasquali, M., Mehedi, M., Serafim, M. S. M., Soellner, M. B., Alteen, M. G., Champion, M. M., Skorodinsky, M., O’Mara, M. L., Bedi, M., Rizzi, M., Levin, M., Mowat, M., Jackson, M. R., Paige, M., Al-Yozbaki, M., Giardini, M. A., Maksimainen, M. M., De Luise, M., Hussain, M. S., Christodoulides, M., Stec, N., Zelinskaya, N., Van Pelt, N., Merrill, N. M., Singh, N., Kootstra, N. A., Singh, N., Gandhi, N. S., Chan, N. L., Trinh, N. M., Schneider, N. O., Matovic, N., Horstmann, N., Longo, N., Bharambe, N., Rouzbeh, N., Mahmoodi, N., Gumede, N. J., Anastasio, N. C., Khalaf, N. B., Rabal, O., Kandror, O., Escaffre, O., Silvennoinen, O., Bishop, O. T., Iglesias, P., Sobrado, P., Chuong, P., O’Connell, P., Martin-Malpartida, P., Mellor, P., Fish, P. V., Moreira, P. O. L., Zhou, P., Liu, P., Liu, P., Wu, P., Agogo-Mawuli, P., Jones, P. L., Ngoi, P., Toogood, P., Ip, P., von Hundelshausen, P., Lee, P. H., Rowswell-Turner, R. B., Balaña-Fouce, R., Rocha, R. E. O., Guido, R. V. C., Ferreira, R. S., Agrawal, R. K., Harijan, R. K., Ramachandran, R., Verma, R., Singh, R. K., Tiwari, R. K., Mazitschek, R., Koppisetti, R. K., Dame, R. T., Douville, R. N., Austin, R. C., Taylor, R. E., Moore, R. G., Ebright, R. H., Angell, R. M., Yan, R., Kejriwal, R., Batey, R. A., Blelloch, R., Vandenberg, R. J., Hickey, R. J., Kelm, R. J., Lake, R. J., Bradley, R. K., Blumenthal, R. M., Solano, R., Gierse, R. M., Viola, R. E., McCarthy, R. R., Reguera, R. M., Uribe, R. V., do Monte-Neto, R. L., Gorgoglione, R., Cullinane, R. T., Katyal, S., Hossain, S., Phadke, S., Shelburne, S. A., Geden, S. E., Johannsen, S., Wazir, S., Legare, S., Landfear, S. M., Radhakrishnan, S. K., Ammendola, S., Dzhumaev, S., Seo, S. Y., Li, S., Zhou, S., Chu, S., Chauhan, S., Maruta, S., Ashkar, S. R., Shyng, S. L., Conticello, S. G., Buroni, S., Garavaglia, S., White, S. J., Zhu, S., Tsimbalyuk, S., Chadni, S. H., Byun, S. Y., Park, S., Xu, S. Q., Banerjee, S., Zahler, S., Espinoza, S., Gustincich, S., Sainas, S., Celano, S. L., Capuzzi, S. J., Waggoner, S. N., Poirier, S., Olson, S. H., Marx, S. O., Van Doren, S. R., Sarilla, S., Brady-Kalnay, S. M., Dallman, S., Azeem, S. M., Teramoto, T., Mehlman, T., Swart, T., Abaffy, T., Akopian, T., Haikarainen, T., Moreda, T. L., Ikegami, T., Teixeira, T. R., Jayasinghe, T. D., Gillingwater, T. H., Kampourakis, T., Richardson, T. I., Herdendorf, T. J., Kotzé, T. J., O’Meara, T. R., Corson, T. W., Hermle, T., Ogunwa, T. H., Lan, T., Su, T., Banjo, T., O’Mara, T. A., Chou, T., Chou, T. F., Baumann, U., Desai, U. R., Pai, V. P., Thai, V. C., Tandon, V., Banerji, V., Robinson, V. L., Gunasekharan, V., Namasivayam, V., Segers, V. F. M., Maranda, V., Dolce, V., Maltarollo, V. G., Scoffone, V. C., Woods, V. A., Ronchi, V. P., Van Hung Le, V., Clayton, W. B., Lowther, W. T., Houry, W. A., Li, W., Tang, W., Zhang, W., Van Voorhis, W. C., Donaldson, W. A., Hahn, W. C., Kerr, W. G., Gerwick, W. H., Bradshaw, W. J., Foong, W. E., Blanchet, X., Wu, X., Lu, X., Qi, X., Xu, X., Yu, X., Qin, X., Wang, X., Yuan, X., Zhang, X., Zhang, Y. J., Hu, Y., Aldhamen, Y. A., Chen, Y., Li, Y., Sun, Y., Zhu, Y., Gupta, Y. K., Pérez-Pertejo, Y., Li, Y., Tang, Y., He, Y., Tse-Dinh, Y. C., Sidorova, Y. A., Yen, Y., Li, Y., Frangos, Z. J., Chung, Z., Su, Z., Wang, Z., Zhang, Z., Liu, Z., Inde, Z., Artía, Z. & Heifets, A., Dec 2024, In: Scientific reports. 14, 1, 7526.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • High-throughput Screening 100%
  • High Throughput Screening 100%
  • Artificial Intelligence 100%
  • High-Throughput Screening 100%
  • Neural Network 100%

• Closed floral structure for self-pollination in cultivated tomato

  Xiao, R., Chen, Z. & Tao, Y., Oct 2024, In: Trends in Plant Science. 29, 10, p. 1059-1061 3 p.

  Rutgers, The State University

  Research output: Contribution to journal › Short survey › peer-review

  • Floral Structure 100%
  • Self-pollination 100%
  • Cultivated Tomato 100%
  • Cleistogamy 100%
  • Anther 100%

• Contributions of the Dachsous intracellular domain to Dachsous-Fat signaling

  Tripathi, B. K. & Irvine, K. D., Dec 2024, In: Development (Cambridge). 151, 23, dev202919.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cell Polarity 100%
  • Intracellular Domain 100%
  • Dachsous 100%
  • Cell Membrane 50%
  • Signal Transduction 50%

• dTBI2: A Calibrated, Tunable Device for Administering Traumatic Brain Injury in Drosophila

  Ratner, S. W., Fetchko, M., Mathivanan, A. S., Kelly, S. E., Gupta, S. & Barber, A. F., Mar 2024, In: Current Protocols. 4, 3, e996.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Traumatic Brain Injury 100%
  • Drosophilidae 100%
  • Tunable Devices 100%
  • Electronic Circuit 100%
  • Actuator 100%

• Erratum: Correction to: Chromatin Immunoprecipitation to Investigate H2A.Z Dynamics in Response to Environmental Changes (Methods in molecular biology (Clifton, N.J.) (2024) 2795 DOI: 10.1007/978-1-0716-3814-9_17)

  Saldierna Guzmán, J. P., Zander, M. & Willige, B. C., 2024, In: Methods in molecular biology (Clifton, N.J.). 2795, p. C1

  Rutgers, The State University

  Research output: Contribution to journal › Comment/debate › peer-review

• Genetic dissection of cis-regulatory control of ZmWUSCHEL1 expression by type B RESPONSE REGULATORS

  Chen, Z., Cortes, L. & Gallavotti, A., Apr 2024, In: Plant physiology. 194, 4, p. 2240-2248 9 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Overexpression 100%
  • Genetic Dissection 100%
  • Cis-regulatory Elements 100%
  • Regulatory Control 100%
  • Enhancer Region 100%

• High-throughput capture of transcription factor-driven epigenome dynamics using PHILO ChIP-seq

  Choudhary, A., Ammari, M., Yoon, H. S. & Zander, M., Dec 11 2024, In: Nucleic acids research. 52, 22, p. e105

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Hormonal influence on maize inflorescence development and reproduction

  Chaudhry, A., Chen, Z. & Gallavotti, A., Dec 2024, In: Plant Reproduction. 37, 4, p. 393-407 15 p.

  Rutgers, The State University

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Maize 100%
  • Maize Inflorescence 100%
  • Hormonal Influence 100%
  • Inflorescence Development 100%
  • Phytohormone 100%

• NAKED ENDOSPERM1, NAKED ENDOSPERM2, and OPAQUE2 interact to regulate gene networks in maize endosperm development

  Wu, H., Galli, M., Spears, C. J., Zhan, J., Liu, P., Yadegari, R., Dannenhoffer, J. M., Gallavotti, A. & Becraft, P. W., Jan 2024, In: Plant Cell. 36, 1, p. 19-39 21 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Gene Network 100%
  • Maize Endosperm 100%
  • Endosperm Development 100%
  • NKD2 100%
  • Cell Development 80%

• Posttranscriptional tuning of gene expression over a large dynamic range in synthetic tobacco chloroplast operons

  Yu, Q., Tungsuchat-Huang, T., Ioannou, A., Barkan, A. & Maliga, P., Sep 2024, In: Plant Journal. 119, 5, p. 2437-2449 13 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Gene Expression 100%
  • Post-transcriptional 100%
  • Tobacco 100%
  • Operon 100%
  • Chloroplast 100%

• Seed plastids: A novel platform for recombinant protein expression

  Mirzaee, M., Leung, A., Parulekar, M., Candia, A., Matsuoka, A., Lutz, K. A. & Maliga, P., Sep 2024, In: Plant biotechnology journal. 22, 9, p. 2575-2577 3 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Structural basis of archaeal FttA-dependent transcription termination

  You, L., Wang, C., Molodtsov, V., Kuznedelov, K., Miao, X., Wenck, B. R., Ulisse, P., Sanders, T. J., Marshall, C. J., Firlar, E., Kaelber, J. T., Santangelo, T. J. & Ebright, R. H., Nov 7 2024, In: Nature. 635, 8037, p. 229-236 8 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  • Transcription Termination 100%
  • Transcription Elongation Complex 100%
  • Archaeal 100%
  • RNA 100%
  • Transcription Elongation 100%

• Sxt1, Isolated from a Therapeutic Phage Cocktail, Is a Broader Host Range Relative of the Phage T3

  Iarema, P., Kotovskaya, O., Skutel, M., Drobiazko, A., Moiseenko, A., Sokolova, O., Samitova, A., Korostin, D., Severinov, K. & Isaev, A., Dec 2024, In: Viruses. 16, 12, 1905.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Tet controls axon guidance in early brain development through glutamatergic signaling

  Tran, H., Le, L., Singh, B. N., Kramer, J. & Steward, R., May 17 2024, In: iScience. 27, 5, 109634.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Glutamatergic Neurotransmission 100%
  • Axon Guidance 100%
  • Early Brain Development 100%
  • Glutamine Synthetase 100%
  • Glutamatergic 100%

• Tet-dependent 5-hydroxymethyl-Cytosine modification of mRNA regulates axon guidance genes in Drosophila

  Singh, B. N., Tran, H., Kramer, J., Kirichenko, E., Changela, N., Wang, F., Feng, Y., Kumar, D., Tu, M., Lan, J., Bizet, M., Fuks, F. & Steward, R., Feb 2024, In: PLoS One. 19, 2 February, e0293894.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Drosophilidae 100%
  • Axon Guidance Molecule 100%
  • 5-hydroxymethylcytosine (5hmC) 100%
  • Cytosine Modification 100%
  • Axon Guidance 100%

• Total Synthesis of Marformycins A and D

  Anwar, A. F., Elbatrawi, Y. M., Degen, D., Ebright, R. H. & Del Valle, J. R., Nov 22 2024, In: Organic letters. 26, 46, p. 10056-10060 5 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  • Further Development 100%
  • Antimicrobial 100%
  • Activity Relationship 100%
  • Solid Phase 100%
  • Antimicrobial Activity 100%
• 2023

  Asymmetric cell division in plant development

  Zhang, Y., Xu, T. & Dong, J., Feb 2023, In: Journal of Integrative Plant Biology. 65, 2, p. 343-370 28 p.

  Rutgers, The State University

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Asymmetric Cell Division 100%
  • Plant Development 100%
  • Molecular Mechanism 28%
  • Knowledge Gaps 14%
  • New Advances 14%

• Author Correction: PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants (Nature Genetics, (2021), 53, 7, (955-961), 10.1038/s41588-021-00882-3)

  Willige, B. C., Zander, M., Yoo, C. Y., Phan, A., Garza, R. M., Wanamaker, S. A., He, Y., Nery, J. R., Chen, H., Chen, M., Ecker, J. R. & Chory, J., Feb 2023, In: Nature genetics. 55, 2, p. 355 1 p.

  Rutgers, The State University

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Environmental Response 100%
  • Chromatin Dynamics 100%
  • Surnames 100%
  • Phytochrome-interacting Factor 100%
  • Dynamics 100%

• Chloroplast transformation for bioencapsulation and oral delivery using the immunoglobulin G fragment crystallizable (Fc) domain

  LaManna, L., Chou, C. H., Lei, H., Barton, E. R. & Maliga, P., Dec 2023, In: Scientific reports. 13, 1, 18916.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Immunoglobulin G 100%
  • Chloroplast Transformation 100%
  • Oral Delivery 100%
  • Fragment Crystallizable 100%
  • Bioencapsulation 100%

• CRISPR/Cas9 Mediated Fluorescent Tagging of Caenorhabditis elegans SPE-38 Reveals a Complete Localization Pattern in Live Spermatozoa

  Zuo, Y., Mei, X. & Singson, A., Apr 2023, In: Biomolecules. 13, 4, 623.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Fluorescent Label 100%
  • Caenorhabditis Elegans 100%
  • Cas9 Protein 100%
  • Localization Pattern 100%
  • SPE-38 100%

• Cyanobacterial photosystem II reaction center design in tobacco chloroplasts increases biomass in low light

  Zhang, Y., Ananyev, G., Matsuoka, A., Dismukes, G. C. & Maliga, P., Apr 2023, In: Plant physiology. 191, 4, p. 2229-2244 16 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Tobacco 100%
  • Chloroplast 100%
  • Cyanobacteria 100%
  • Low Light 100%
  • Photosystem II Reaction Center 100%

• Editorial overview: Dynamics underlying plasticity and robustness

  De Rybel, B. & Dong, J., Dec 1 2023, In: Current Opinion in Plant Biology. 76, p. 102453 1 p.

  Rutgers, The State University

  Research output: Contribution to journal › Editorial › peer-review

  Open Access

• Identification and Structural Modeling of the RNA Polymerase Omega Subunits in Chlamydiae and Other Obligate Intracellular Bacteria

  Cheng, A., Wan, D., Ghatak, A., Wang, C., Feng, D., Fondell, J. D., Ebright, R. H. & Fan, H., Jan 2023, In: mBio. 14, 1

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • RNA-dependent RNA Polymerase (RdRP) 100%
  • Chlamydia 100%
  • Obligate Intracellular Bacteria 100%
  • Structural Modeling 100%
  • Core Enzyme 100%

• Linking genotypic and phenotypic changes in the E. coli long-term evolution experiment using metabolomics

  Favate, J. S., Skalenko, K. S., Chiles, E., Su, X., Yadavalli, S. S. & Shah, P., Nov 22 2023, In: eLife. 12

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Phenotypic Change 100%
  • Escherichia Coli 100%
  • Metabolism 100%
  • Metabolomics 100%
  • Long-term Evolution Experiment 100%

• Plant cell polarity: The many facets of sidedness

  Dong, J., Van Norman, J., Žárský, V. & Zhang, Y., Sep 2023, In: Plant physiology. 193, 1, p. 1-5 5 p.

  Rutgers, The State University

  Research output: Contribution to journal › Editorial › peer-review

  Open Access

• SPE-51, a sperm-secreted protein with an immunoglobulin-like domain, is required for fertilization in C. elegans

  Mei, X., Maniates, K. A., Looper, A., Krauchunas, A. R., Druzhinina, M., Dharia, S., Ni, J., Singaravelu, G., Gu, S. G., Shakes, D. C., Grant, B. D. & Singson, A. W., Jul 24 2023, In: Current biology : CB. 33, 14, p. 3048-3055 8 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Caenorhabditis Elegans 100%
  • Secreted Proteins 100%
  • Fertilization 100%
  • Immunoglobulin Domain 100%
  • Genetics 66%

• The EGF-motif-containing protein SPE-36 is a secreted sperm protein required for fertilization in C. elegans

  Krauchunas, A. R., Marcello, M. R., Looper, A., Mei, X., Putiri, E., Singaravelu, G., Ahmed, I. I. & Singson, A., Jul 24 2023, In: Current biology : CB. 33, 14, p. 3056-3064 9 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Caenorhabditis Elegans 100%
  • Fertilization 100%
  • Sperm Proteins 100%
  • EGF Motif 100%
  • Cell Function 25%

• Where are all the egg genes?

  Maniates, K. A. & Singson, A., Feb 3 2023, In: Frontiers in Cell and Developmental Biology. 11, 1107312.

  Rutgers, The State University

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Fertilization 100%
  • Gene Discovery 100%
  • Egg Fertilization 100%
  • Gametes 50%
  • On-state Current 50%
• 2022

  A Brief History of Drosophila (Female) Meiosis

  Fellmeth, J. E. & McKim, K. S., May 2022, In: Genes. 13, 5, 775.

  Rutgers, The State University

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Drosophilidae 100%
  • Meiosis 100%
  • Female Meiosis 100%
  • Homologous Chromosomes 25%
  • Chromosome Segregation 25%

• Analysis of the Drosophila Ajuba LIM protein defines functions for distinct LIM domains

  Rauskolb, C., Han, A., Kirichenko, E., Ibar, C. & Irvine, K. D., Aug 2022, In: PLoS One. 17, 8 August, e0269208.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Drosophilidae 100%
  • Warts 100%
  • Ajuba 100%
  • LIM Protein 100%
  • LIM Domain 100%

• Auxin boosts energy generation pathways to fuel pollen maturation in barley

  Amanda, D., Frey, F. P., Neumann, U., Przybyl, M., Šimura, J., Zhang, Y., Chen, Z., Gallavotti, A., Fernie, A. R., Ljung, K. & Acosta, I. F., Apr 25 2022, In: Current Biology. 32, 8, p. 1798-1811.e8

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Energy Generation 100%
  • Auxin 100%
  • Barley 100%
  • Generation Pathway 100%
  • Pollen Maturation 100%

• Bacterial Small Membrane Proteins: The Swiss Army Knife of Regulators at the Lipid Bilayer

  Yadavalli, S. S. & Yuan, J., Jan 2022, In: Journal of bacteriology. 204, 1, e00344-21.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Lipid Bilayer 100%
  • Small Protein 100%
  • Army 100%
  • Knife 100%
  • Small Membrane Protein 100%

• Bone morphogenetic protein signaling regulation of AMPK and PI3K in lung cancer cells and C. elegans

  Vora, M., Mondal, A., Jia, D., Gaddipati, P., Akel, M., Gilleran, J., Roberge, J., Rongo, C. & Langenfeld, J., Dec 2022, In: Cell and Bioscience. 12, 1, 76.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Signaling Regulation 100%
  • Lung Cancer Cells 100%
  • Caenorhabditis Elegans 100%
  • Phosphoinositide 3-kinase (PI3K) 100%
  • Bone Morphogenetic Protein Signaling 100%

• Connected function of PRAF/RLD and GNOM in membrane trafficking controls intrinsic cell polarity in plants

  Wang, L., Li, D., Yang, K., Guo, X., Bian, C., Nishimura, T., Le, J., Morita, M. T., Bergmann, D. C. & Dong, J., Dec 2022, In: Nature communications. 13, 1, 7.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cell Polarity 100%
  • Stomatal Lineage 100%
  • Membrane Trafficking 100%
  • Lineages 100%
  • Arabidopsis 66%

• Design, Synthesis, and Characterization of TNP-2198, a Dual-Targeted Rifamycin-Nitroimidazole Conjugate with Potent Activity against Microaerophilic and Anaerobic Bacterial Pathogens

  Ma, Z., He, S., Yuan, Y., Zhuang, Z., Liu, Y., Wang, H., Chen, J., Xu, X., Ding, C., Molodtsov, V., Lin, W., Robertson, G. T., Weiss, W. J., Pulse, M., Nguyen, P., Duncan, L., Doyle, T., Ebright, R. H. & Lynch, A. S., Mar 24 2022, In: Journal of medicinal chemistry. 65, 6, p. 4481-4495 15 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bacterial Pathogens 100%
  • Nitroimidazole 100%
  • Rifamycin 100%
  • Microaerophilic 100%
  • Dual-target 100%

• Dichotomy of the BSL phosphatase signaling spatially regulates MAPK components in stomatal fate determination

  Guo, X., Ding, X. & Dong, J., Dec 2022, In: Nature communications. 13, 1, 2438.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Phosphatase 100%
  • Fate Determination 100%
  • MAPK Signaling 100%
  • Mitogen-Activated Protein Kinase 100%
  • Mitogen-activated Protein Kinase 66%

• Editorial: Stomatal Biology and Beyond

  Ye, W., Dong, J. & Kinoshita, T., Feb 11 2022, In: Frontiers in Plant Science. 13, 848811.

  Rutgers, The State University

  Research output: Contribution to journal › Editorial › peer-review

  Open Access

• Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling

  Cope, A. L., Vellappan, S., Favate, J. S., Skalenko, K. S., Yadavalli, S. S. & Shah, P., 2022, Methods in Molecular Biology. Humana Press Inc., p. 83-110 28 p. (Methods in Molecular Biology; vol. 2404).

  Rutgers, The State University

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Gene Expression 100%
  • Translating (Language) 100%
  • Post-Transcriptional Regulation 100%
  • Quality Control 100%
  • Bioinformatics 100%

• Fertilization: what we can learn from worms

  Maniates, K. & Singson, A., 2022, In: Biochemist. 44, 5, p. 9-12 4 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Worm 100%
  • Fertilization 100%
  • Caenorhabditis Elegans 100%
  • Genetics 50%
  • Mutagenesis 50%

• Highway to hell-thy meiotic divisions: Chromosome passenger complex functions driven by microtubules: CPC interactions with both the chromosomes and microtubules are important for spindle assembly and function

  McKim, K. S., Jan 2022, In: BioEssays. 44, 1, 2100202.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Complex Interactions 100%
  • Microtubules 100%
  • Complex Function 100%
  • Meiotic Division 100%
  • Spindle Assembly 100%

• Lack of ethylene does not affect reproductive success and synergid cell death in Arabidopsis

  Li, W., Li, Q., Lyu, M., Wang, Z., Song, Z., Zhong, S., Gu, H., Dong, J., Dresselhaus, T., Zhong, S. & Qu, L. J., Feb 7 2022, In: Molecular Plant. 15, 2, p. 354-362 9 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cell Death 100%
  • Arabidopsis 100%
  • Reproductive Success 100%
  • Ethylene 100%
  • Synergid Cell 100%

• Mechanisms of temperature-regulated growth and thermotolerance in crop species

  Chen, Z., Galli, M. & Gallavotti, A., Feb 2022, In: Current Opinion in Plant Biology. 65, 102134.

  Rutgers, The State University

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Thermotolerance 100%
  • Crop Species 100%
  • Critical Thermal Maximum 100%
  • Heat Tolerance 100%
  • High Temperature 50%

• Multiple sgRNAs for one-step inactivation of the duplicated acetyl-coenzyme A carboxylase 2 (ACC2) genes in Brassica napus

  LaManna, L. M., Parulekar, M. S. & Maliga, P., May 2022, In: Plant physiology. 189, 1, p. 178-187 10 p.

  Rutgers, The State University

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Acetyl Coenzyme A (acetyl-CoA) 100%
  • Brassica Napus 100%
  • Single Guide RNA (sgRNA) 100%
  • Carboxylase 100%
  • Brassica 100%