Waksman Institute of Microbiology

2022

Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling

Cope, A. L., Vellappan, S., Favate, J. S., Skalenko, K. S., Yadavalli, S. S. & Shah, P., 2022, Methods in Molecular Biology. Humana Press Inc., p. 83-110 28 p. (Methods in Molecular Biology; vol. 2404).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2021

Plastid marker gene excision in the tobacco shoot apex by agrobacterium-delivered cre recombinase

Tungsuchat-Huang, T. & Maliga, P., 2021, Methods in Molecular Biology. Humana Press Inc., p. 177-193 17 p. (Methods in Molecular Biology; vol. 2317).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Transformation of the plastid genome in tobacco: the model system for chloroplast genome engineering

Maliga, P., Tungsuchat-Huang, T. & Lutz, K. A., 2021, Methods in Molecular Biology. Humana Press Inc., p. 135-153 19 p. (Methods in Molecular Biology; vol. 2317).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2019

Localization of Hippo Signaling Components in Drosophila by Fluorescence and Immunofluorescence

Rauskolb, C. & Irvine, K. D., 2019, Methods in Molecular Biology. Humana Press Inc., p. 61-73 13 p. (Methods in Molecular Biology; vol. 1893).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Mutagenesis and imaging studies of BMP signaling mechanisms in C. elegans

Savage-Dunn, C., Gleason, R. J., Liu, J. & Padgett, R. W., 2019, Methods in Molecular Biology. Humana Press Inc., p. 51-73 23 p. (Methods in Molecular Biology; vol. 1891).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

2018

Analysis of Bacterial Transcription by “Massively Systematic Transcript End Readout,” MASTER

Vvedenskaya, I. O., Goldman, S. R. & Nickels, B. E., Jan 1 2018, High-Density Sequencing Applications in Microbial Molecular Genetics. Carpousis, A. J. (ed.). Academic Press Inc., p. 269-302 34 p. (Methods in Enzymology; vol. 612).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Scopus citations

Plant transformation by particle bombardment

Klein, T. M. & Maliga, P., Jan 1 2018, Biotechnology for Biological Control of Pests and Vectors. CRC Press, p. 105-118 14 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Rewiring of cyanobacterial metabolism for hydrogen production: Synthetic biology approaches and challenges

Krishnan, A., Qian, X., Ananyev, G., Lun, D. S. & Dismukes, G. C., 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 171-213 43 p. (Advances in Experimental Medicine and Biology; vol. 1080).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

4 Scopus citations

2017

Maize seed storage proteins

Larkins, B. A., Wu, Y., Song, R. & Messing, J., Jan 1 2017, Maize Kernel Development. CABI International, p. 175-189 15 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

14 Scopus citations

PacBio for haplotyping in gene families

Zhang, W. & Messing, J., 2017, Methods in Molecular Biology. Humana Press Inc., p. 61-71 11 p. (Methods in Molecular Biology; vol. 1551).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2016

Gene Regulation By Cold Shock Proteins via Transcription Antitermination

Phadtare, S. & Severinov, K., Aug 12 2016, Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria. Wiley-Blackwell, Vol. 2. p. 827-836 10 p.

Rowan University, Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Kymographic analysis of transport in an individual neuronal sensory cilium in caenorhabditis elegans

Barr, M. M. & O’Hagan, R., 2016, Methods in Molecular Biology. Humana Press Inc., p. 107-122 16 p. (Methods in Molecular Biology; vol. 1454).

Montclair State University, Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

3 Scopus citations

Transformation in Plastids

Maliga, P., Aug 27 2016, Breeding Genetics and Biotechnology. Elsevier Inc., Vol. 2. p. 255-261 7 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

2015

Detection and control of gluten as a food allergen

Nasr, I., Messing, J., Nasr, I. H. & Ciclitira, P. J., Jan 1 2015, Handbook of Food Allergen Detection and Control. Elsevier Ltd., p. 367-377 11 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Molecular genetics of corn

Walbot, V. & Messing, J., Oct 26 2015, Corn and Corn Improvement: Third Edition. wiley, p. 389-429 41 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Site-specific incorporation of probes into RNA polymerase by unnatural-amino-acid mutagenesis and staudinger-bertozzi ligation

Chakraborty, A., Mazumder, A., Lin, M., Hasemeyer, A., Xu, Q., Wang, D., Ebright, Y. W. & Ebright, R. H., Feb 9 2015, Bacterial Transcriptional Control: Methods and Protocols. Springer New York, p. 101-131 31 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Open Access

2014

Control of Growth During Regeneration

Sun, G. & Irvine, K. D., 2014, Current Topics in Developmental Biology. Academic Press Inc., p. 95-120 26 p. (Current Topics in Developmental Biology; vol. 108).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

42 Scopus citations

Notch-ligand binding assays in Drosophila cells

Xu, A. & Irvine, K. D., 2014, Notch Signaling: Methods and Protocols. Humana Press Inc., p. 277-284 8 p. (Methods in Molecular Biology; vol. 1187).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2013

Evolution, Structure, and Function of Prolamin Storage Proteins

Holding, D. & Messing, J., Feb 5 2013, Seed Genomics. Wiley-Blackwell, p. 138-158 21 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

8 Scopus citations

Fertilization

Marcello, M. R., Singaravelu, G. & Singson, A., 2013, Germ Cell Development in C. elegans. Springer Science and Business Media, LLC, p. 321-350 30 p. (Advances in Experimental Medicine and Biology; vol. 757).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

26 Scopus citations

2012

Use of semi-quantitative northern blot analysis to determine relative quantities of bacterial CRISPR transcripts

Severinov, K., 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 73-86 14 p. (Methods in Molecular Biology; vol. 905).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

4 Scopus citations

2011

EGG molecules couple the oocyte-to-embryo transition with cell cycle progression

Parry, J. M. & Singson, A., 2011, Cell Cycle in Development. Kubiak, J. (ed.). p. 135-151 17 p. (Results and Problems in Cell Differentiation; vol. 53).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Open Access

11 Scopus citations

Engineering the Plastid Genome of Nicotiana sylvestris, a Diploid Model Species for Plastid Genetics

Maliga, P. & Svab, Z., 2011, Methods in Molecular Biology. Humana Press Inc., p. 37-50 14 p. (Methods in Molecular Biology; vol. 701).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

New insights into the mechanism of fertilization in nematodes

Singaravelu, G. & Singson, A., 2011, International Review of Cell and Molecular Biology. Elsevier Inc., p. 211-238 28 p. (International Review of Cell and Molecular Biology; vol. 289).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Open Access

9 Scopus citations

Plastid transformation as a tool for plant- based production of vaccines and therapeutic proteins

Lenzi, P., Scotti, N., Maliga, P. & Cardi, T., Nov 1 2011, Plant-derived Vaccines: Technologies and Applications. Future Medicine Ltd., p. 57-66 10 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

The Genetics and Cell Biology of Fertilization

Geldziler, B. D., Marcello, M. R., Shakes, D. C. & Singson, A., 2011, Methods in Cell Biology. Academic Press Inc., p. 343-375 33 p. (Methods in Cell Biology; vol. 106).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

13 Scopus citations

Transplastomics in Arabidopsis: Progress Toward Developing an Efficient Method

Lutz, K. A., Azhagiri, A. & Maliga, P., 2011, Chloroplast Research in Arabidopsis: Methods and Protocols, Volume I. Humana Press Inc., p. 133-147 15 p. (Methods in Molecular Biology; vol. 774).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

5 Scopus citations

2010

Azide-Specific Labeling of Biomolecules by Staudinger–Bertozzi Ligation: Phosphine Derivatives of Fluorescent Probes Suitable for Single-Molecule Fluorescence Spectroscopy

Chakraborty, A., Wang, D., Ebright, Y. W. & Ebright, R. H., Jan 2010, Methods in Enzymology. Academic Press Inc., p. 19-30 12 p. (Methods in Enzymology; vol. 472).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

19 Scopus citations

Large-scale identification and analysis of c-proteins

Sorokin, V., Severinov, K. & Gelfand, M. S., 2010, Methods in Molecular Biology. Humana Press Inc., p. 269-282 14 p. (Methods in Molecular Biology; vol. 674).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2009

Static and kinetic site-specific protein-DNA photocrosslinking: Analysis of bacterial transcription initiation complexes

Naryshkin, N., Druzhinin, S., Revyakin, A., Kim, Y., Mekler, V. & Ebright, R. H., 2009, DNA-Protein Interactions: Principles and Protocols, Third Edition. Moss, T. & Leblanc, B. (eds.). p. 403-437 35 p. (Methods in Molecular Biology; vol. 543).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Open Access

6 Scopus citations

The polyploid origin of maize

Messing, J., 2009, Handbook of Maize: Genetics and Genomics. Springer New York, p. 221-238 18 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Scopus citations

The structure of the maize genome

Messing, J., 2009, Biotechnology in Agriculture and Forestry. Springer International Publishing, p. 213-230 18 p. (Biotechnology in Agriculture and Forestry; vol. 63).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2008

Grass genome structure and evolution

Messing, J. & Bennetzen, J., 2008, Plant Genomes. Volff, J.-N. (ed.). p. 41-56 16 p. (Genome Dynamics; vol. 4).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

18 Scopus citations

Synapsis, double-strand breaks, and domains of crossover control in drosophila females

Mehrotra, S., Hawley, R. S. & McKim, K. S., 2008, Recombination and Meiosis: Crossing-Over and Disjunction. Egel, R. & Lankenau, D.-H. (eds.). p. 125-151 27 p. (Genome Dynamics and Stability; vol. 2).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

5 Scopus citations

2007

Transformation of the Plastid Genome to Study RNA Editing

Lutz, K. A. & Maliga, P., 2007, RNA Editing. Academic Press Inc., p. 501-518 18 p. (Methods in Enzymology; vol. 424).

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

16 Scopus citations

2003

Toll-Dorsal Signaling in Dorsal-Ventral Patterning and Innate Immunity

Bhattacharya, A. & Steward, R., Jan 1 2003, Handbook of Cell Signaling: Volume 1-3. Elsevier, Vol. 1-3. p. 779-781 3 p.

Rutgers, The State University

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Waksman Institute of Microbiology

Research output

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