Projects per year
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Dive into the research topics where Ben Raphael is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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Projects
- 3 Finished
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Comprehensive and Robust Tools for Analysis of Tumor Heterogeneity and Evolution
Raphael, B. (PI)
9/24/20 → 8/31/26
Project: Research
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Computational Characterization of Genetic Heterogeneity
Raphael, B. (PI)
9/1/16 → 8/31/19
Project: Research
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CAREER: Algorithms for Next-Generation Genomics
Raphael, B. (PI)
NSF - National Science Foundation
9/1/16 → 12/31/19
Project: Research
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Genomic evolution of pancreatic cancer at single-cell resolution
Zhang, H., Sashittal, P., Karnoub, E. R., Jakatdar, A., Umeda, S., Hong, J., Noronha, A. M., Cardenas, A., Erakky, A., McIntyre, C. A., Hayashi, A., Lecomte, N., Hilmi, M., Park, W., Pang, N., O’Reilly, E. M., Wei, A. C., Raphael, B. J. & Iacobuzio-Donahue, C. A., Feb 2026, In: Nature genetics. 58, 2, p. 355-365 11 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Inferring cell differentiation maps from lineage tracing data
Sashittal, P., Zhang, R. Y., Law, B. K., Schmidt, H., Strzalkowski, A., Bolondi, A., Chan, M. M. & Raphael, B. J., Mar 2026, In: Nature Methods. 23, 3, p. 532-541 10 p.Research output: Contribution to journal › Article › peer-review
Open Access -
The tree labeling polytope: A unified approach to ancestral reconstruction problems
Schmidt, H. & Raphael, B. J., Jul 15 2026, In: Cell Systems. 17, 7, 101615.Research output: Contribution to journal › Article › peer-review
Open Access -
A graph homomorphism approach for unraveling histories of metastatic cancers and viral outbreaks under evolutionary constraints
Kuzmin, K., Schmidt, H., Kafi Kang, M., Snir, S., Raphael, B. J. & Skums, P., Dec 2025, In: Nature communications. 16, 1, 8027.Research output: Contribution to journal › Article › peer-review
Open Access -
Anomaly detection in spatial transcriptomics via spatially localized density comparison
Hu, G., Gold, J., Chitra, U., Joshi, S. & Raphael, B. J., Jul 1 2025, In: Bioinformatics. 41, Supplement_1, p. i493-i501Research output: Contribution to journal › Article › peer-review
Open Access