Dynamic gene expression profiling using a microfabricated living cell array

Deanna M. Thompson, Kevin R. King, Kenneth J. Wieder, Mehmet Toner, Martin L. Yarmush, Arul Jayaraman

Research output: Contribution to journalArticlepeer-review

140 Scopus citations


We describe the development of a microfluidic platform for continuous monitoring of gene expression in live cells. This optically transparent microfluidic device integrates high-throughput molecular stimulation with nondestructive monitoring of expression events in individual living cells, hence, a living cell array (LCA). Several concentrations of a soluble molecular stimulus are generated in an upstream microfluidic network and used to stimulate downstream reporter cells, each containing a green fluorescence reporter plasmid for a gene of interest. Cellular fluorescence is continuously monitored and quantified to infer the expression dynamics of the gene being studied. We demonstrate this approach by profiling the activation of the transcription factor NF-κB in HeLa S3 cells in response to varying doses of the inflammatory cytokine TNF-α. The LCA platform offers a unique opportunity to simultaneously control dynamic inputs and measure dynamic outputs from adherent mammalian cells in a high-throughput fashion. This approach to profiling expression dynamics, in conjunction with complementary techniques such as DNA microarrays, will help provide a more complete picture of the dynamic cellular response to diverse soluble stimuli.

Original languageEnglish (US)
Pages (from-to)4098-4103
Number of pages6
JournalAnalytical Chemistry
Issue number14
StatePublished - Jul 15 2004
Externally publishedYes

All Science Journal Classification (ASJC) codes

  • Analytical Chemistry


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