Evolution of standardization and dissemination of cryo-EM structures and data jointly by the community, PDB, and EMDB

Wah Chiu, Michael F. Schmid, Grigore D. Pintilie, Catherine L. Lawson

Research output: Contribution to journalReview articlepeer-review

1 Scopus citations

Abstract

Cryogenic electronmicroscopy (cryo-EM)methods began to be used in the mid-1970s to study thin and periodic arrays of proteins. Following a half-century of development in cryo-specimen preparation, instrumentation, data collection, data processing, andmodeling software, cryo-EMhas becomea routinemethod for solving structures from large biological assemblies to small biomolecules at near to true atomic resolution. This review explores the critical roles played by the Protein Data Bank (PDB) and Electron Microscopy Data Bank (EMDB) in partnership with the community to develop the necessary infrastructure to archive cryo-EM maps and associated models. Public access to cryo-EM structure data has in turn facilitated better understanding of structure-function relationships and advancement of image processing and modeling tool development. The partnership between the global cryo-EM community and PDB and EMDB leadership has synergistically shaped the standards for metadata, one-stop deposition ofmaps andmodels, and validationmetrics to assess the quality of cryo-EM structures. The advent of cryoelectron tomography (cryo-ET) for in situ molecular cell structures at a broad resolution range and their correlations with other imaging data introduce new data archival challenges in terms of data size and complexity in the years to come.

Original languageEnglish (US)
Article number100560
JournalJournal of Biological Chemistry
Volume296
DOIs
StatePublished - Jan 1 2021

All Science Journal Classification (ASJC) codes

  • Molecular Biology
  • Biochemistry
  • Cell Biology

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