Ligand Depot: A data warehouse for ligands bound to macromolecules

Zukang Feng; Li Chen; Himabindu Maddula; Ozgur Akcan; Rose Oughtred; Helen M. Berman; John Westbrook

doi:https://doi.org/10.1093/bioinformatics/bth214

Ligand Depot: A data warehouse for ligands bound to macromolecules

Zukang Feng, Li Chen, Himabindu Maddula, Ozgur Akcan, Rose Oughtred, Helen M. Berman, John Westbrook

Rutgers, The State University

Research output: Contribution to journal › Article › peer-review

134 Scopus citations

Abstract

Summary: Ligand Depot is an integrated data resource for finding information about small molecules bound to proteins and nucleic acids. The initial release (version 1.0, November, 2003) focuses on providing chemical and structural information for small molecules found as part of the structures deposited in the Protein Data Bank. Ligand Depot accepts keyword-based queries and also provides a graphical interface for performing chemical substructure searches. A wide variety of web resources that contain information on small molecules may also be accessed through Ligand Depot.

Original language	English (US)
Pages (from-to)	2153-2155
Number of pages	3
Journal	Bioinformatics
Volume	20
Issue number	13
DOIs	https://doi.org/10.1093/bioinformatics/bth214
State	Published - Sep 1 2004

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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https://doi.org/10.1093/bioinformatics/bth214

Cite this

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abstract = "Summary: Ligand Depot is an integrated data resource for finding information about small molecules bound to proteins and nucleic acids. The initial release (version 1.0, November, 2003) focuses on providing chemical and structural information for small molecules found as part of the structures deposited in the Protein Data Bank. Ligand Depot accepts keyword-based queries and also provides a graphical interface for performing chemical substructure searches. A wide variety of web resources that contain information on small molecules may also be accessed through Ligand Depot.",

author = "Zukang Feng and Li Chen and Himabindu Maddula and Ozgur Akcan and Rose Oughtred and Berman, {Helen M.} and John Westbrook",

note = "Funding Information: This work was sponsored by the State of New Jersey Commission on Higher Education, Rutgers Strategic Resources and Opportunity Analysis project and by funds that support the RCSB PDB from the NSF, NIGMS, DOE, NLM, NCI, NCRR, NIBIB and NINDS.",

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T1 - Ligand Depot

T2 - A data warehouse for ligands bound to macromolecules

AU - Feng, Zukang

AU - Chen, Li

AU - Maddula, Himabindu

AU - Akcan, Ozgur

AU - Oughtred, Rose

AU - Berman, Helen M.

AU - Westbrook, John

N1 - Funding Information: This work was sponsored by the State of New Jersey Commission on Higher Education, Rutgers Strategic Resources and Opportunity Analysis project and by funds that support the RCSB PDB from the NSF, NIGMS, DOE, NLM, NCI, NCRR, NIBIB and NINDS.

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N2 - Summary: Ligand Depot is an integrated data resource for finding information about small molecules bound to proteins and nucleic acids. The initial release (version 1.0, November, 2003) focuses on providing chemical and structural information for small molecules found as part of the structures deposited in the Protein Data Bank. Ligand Depot accepts keyword-based queries and also provides a graphical interface for performing chemical substructure searches. A wide variety of web resources that contain information on small molecules may also be accessed through Ligand Depot.

AB - Summary: Ligand Depot is an integrated data resource for finding information about small molecules bound to proteins and nucleic acids. The initial release (version 1.0, November, 2003) focuses on providing chemical and structural information for small molecules found as part of the structures deposited in the Protein Data Bank. Ligand Depot accepts keyword-based queries and also provides a graphical interface for performing chemical substructure searches. A wide variety of web resources that contain information on small molecules may also be accessed through Ligand Depot.

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Ligand Depot: A data warehouse for ligands bound to macromolecules

Abstract

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