Palaeogenomics of plants: Synteny-based modelling of extinct ancestors

Michael Abrouk; Florent Murat; Caroline Pont; Joachim Messing; Scott Jackson; Thomas Faraut; Eric Tannier; Christophe Plomion; Richard Cooke; Catherine Feuillet; Jérôme Salse

doi:10.1016/j.tplants.2010.06.001

Palaeogenomics of plants: Synteny-based modelling of extinct ancestors

Michael Abrouk, Florent Murat, Caroline Pont, Joachim Messing, Scott Jackson, Thomas Faraut, Eric Tannier, Christophe Plomion, Richard Cooke, Catherine Feuillet, Jérôme Salse

Rutgers, The State University

Research output: Contribution to journal › Short survey › peer-review

89 Scopus citations

Abstract

In the past ten years, international initiatives have led to the development of large sets of genomic resources that allow comparative genomic studies between plant genomes at a high level of resolution. Comparison of map-based genomic sequences revealed shared intra-genomic duplications, providing new insights into the evolution of flowering plant genomes from common ancestors. Plant genomes can be presented as concentric circles, providing a new reference for plant chromosome evolutionary relationships and an efficient tool for gene annotation and cross-genome markers development. Recent palaeogenomic data demonstrate that whole-genome duplications have provided a motor for the evolutionary success of flowering plants over the last 50-70 million years.

Original language	American English
Pages (from-to)	479-487
Number of pages	9
Journal	Trends in Plant Science
Volume	15
Issue number	9
DOIs	https://doi.org/10.1016/j.tplants.2010.06.001
State	Published - Sep 2010

ASJC Scopus subject areas

Plant Science

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10.1016/j.tplants.2010.06.001

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title = "Palaeogenomics of plants: Synteny-based modelling of extinct ancestors",

abstract = "In the past ten years, international initiatives have led to the development of large sets of genomic resources that allow comparative genomic studies between plant genomes at a high level of resolution. Comparison of map-based genomic sequences revealed shared intra-genomic duplications, providing new insights into the evolution of flowering plant genomes from common ancestors. Plant genomes can be presented as concentric circles, providing a new reference for plant chromosome evolutionary relationships and an efficient tool for gene annotation and cross-genome markers development. Recent palaeogenomic data demonstrate that whole-genome duplications have provided a motor for the evolutionary success of flowering plants over the last 50-70 million years.",

author = "Michael Abrouk and Florent Murat and Caroline Pont and Joachim Messing and Scott Jackson and Thomas Faraut and Eric Tannier and Christophe Plomion and Richard Cooke and Catherine Feuillet and J{\'e}r{\^o}me Salse",

note = "Funding Information: This work has been supported by grants from the Agence Nationale de la Recherche (Program ANRjc-PaleoCereal, ref: ANR-09-JCJC-0058-01).",

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doi = "10.1016/j.tplants.2010.06.001",

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T2 - Synteny-based modelling of extinct ancestors

AU - Abrouk, Michael

AU - Murat, Florent

AU - Pont, Caroline

AU - Messing, Joachim

AU - Jackson, Scott

AU - Faraut, Thomas

AU - Tannier, Eric

AU - Plomion, Christophe

AU - Cooke, Richard

AU - Feuillet, Catherine

AU - Salse, Jérôme

N1 - Funding Information: This work has been supported by grants from the Agence Nationale de la Recherche (Program ANRjc-PaleoCereal, ref: ANR-09-JCJC-0058-01).

PY - 2010/9

Y1 - 2010/9

N2 - In the past ten years, international initiatives have led to the development of large sets of genomic resources that allow comparative genomic studies between plant genomes at a high level of resolution. Comparison of map-based genomic sequences revealed shared intra-genomic duplications, providing new insights into the evolution of flowering plant genomes from common ancestors. Plant genomes can be presented as concentric circles, providing a new reference for plant chromosome evolutionary relationships and an efficient tool for gene annotation and cross-genome markers development. Recent palaeogenomic data demonstrate that whole-genome duplications have provided a motor for the evolutionary success of flowering plants over the last 50-70 million years.

AB - In the past ten years, international initiatives have led to the development of large sets of genomic resources that allow comparative genomic studies between plant genomes at a high level of resolution. Comparison of map-based genomic sequences revealed shared intra-genomic duplications, providing new insights into the evolution of flowering plant genomes from common ancestors. Plant genomes can be presented as concentric circles, providing a new reference for plant chromosome evolutionary relationships and an efficient tool for gene annotation and cross-genome markers development. Recent palaeogenomic data demonstrate that whole-genome duplications have provided a motor for the evolutionary success of flowering plants over the last 50-70 million years.

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Palaeogenomics of plants: Synteny-based modelling of extinct ancestors

Abstract

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