Quality assurance for the query and distribution systems of the RCSB Protein Data Bank

Wolfgang F. Bluhm, Bojan Beran, Chunxiao Bi, Dimitris Dimitropoulos, Andreas Prliá, Gregory B. Quinn, Peter W. Rose, Chaitali Shah, Jasmine Young, Benjamin Yukich, Helen M. Berman, Philip E. Bourne

Research output: Contribution to journalArticlepeer-review

8 Scopus citations

Abstract

The RCSB Protein Data Bank (RCSB PDB, www.pdb.org) is a key online resource for structural biology and related scientific disciplines. The website is used on average by 165 000 unique visitors per month, and more than 2000 other websites link to it. The amount and complexity of PDB data as well as the expectations on its usage are growing rapidly. Therefore, ensuring the reliability and robustness of the RCSB PDB query and distribution systems are crucially important and increasingly challenging. This article describes quality assurance for the RCSB PDB website at several distinct levels, including: (i) hardware redundancy and failover, (ii) testing protocols for weekly database updates, (iii) testing and release procedures for major software updates and (iv) miscellaneous monitoring and troubleshooting tools and practices. As such it provides suggestions for how other websites might be operated.

Original languageEnglish (US)
Article numberbar003
JournalDatabase
Volume2011
DOIs
StatePublished - 2011

All Science Journal Classification (ASJC) codes

  • Information Systems
  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

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